PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99228.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 338aa    MW: 38060.5 Da    PI: 6.85
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99228.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-18150247195
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                 f+k+l++sdv++++r++lpkk ae++   ++++e++ +++ d +g  +W++k+++  +++s++yvl+ ++ +Fv+ +gL+ gD+++ +  ++ ++ ++v
  KHM99228.1 150 FQKELKNSDVSSLRRMILPKKAAEAFlpALESKEGIVISMDDIDGlHVWSFKYRFwpNNNSRMYVLE-NTGDFVNTHGLRFGDSILVY--QDsENNNYV 245
                 99**************************77777999*********9*******9989999999***9.*****************999..443666666 PP

                 EE CS
          B3  94 vk 95 
                 ++
  KHM99228.1 246 IQ 247
                 65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-26142254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-24148250No hitNo description
SuperFamilySSF1019361.04E-20148247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.953150252IPR003340B3 DNA binding domain
PfamPF023622.0E-15150248IPR003340B3 DNA binding domain
SMARTSM010191.1E-19150252IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMMDPRQREK LLHKTEACAF VAGVVPELSL VTVPGNNNNT NNVNNNNNNV SHSQSHRSGR  60
IHENHHHHHL GLVAAVSTTF GTVHRKKRMA RQRRSTNPTL LMNPLINNNN NKSGSSLPSP  120
STASSSHVPL SSSTLPPARE IDQRRLRFLF QKELKNSDVS SLRRMILPKK AAEAFLPALE  180
SKEGIVISMD DIDGLHVWSF KYRFWPNNNS RMYVLENTGD FVNTHGLRFG DSILVYQDSE  240
NNNYVIQAKK ASDQDEFMEE TSDTINDIFL NDYEVNKPGC FNVTYPAVND TGMSFIYETT  300
FSNDSPLDFL GGSMTNFSRI GPVETFGSVE NLSLDDFY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548926.10.0PREDICTED: B3 domain-containing transcription factor FUS3-like
SwissprotQ9LW318e-88FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A0B2NVE60.0A0A0B2NVE6_GLYSO; B3 domain-containing transcription factor FUS3
STRINGGLYMA16G05480.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98582838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-82B3 family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]